PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_10873.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family E2F/DP
Protein Properties Length: 275aa    MW: 31138.8 Da    PI: 6.5158
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_10873.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP81.85.6e-26890271
                  E2F_TDP  2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                             ++++Lr+++ k   ++ek+e+  ++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Rsa1.0_10873.1_g00002.1  8 TGRGLRQFSLK---VCEKVESkVRTTYNEVADELVAEfalpnndgtppdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 90
                             689********...*****99899*****************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.9E-1191275IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.108.3E-45396IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.3E-33790IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.2E-241090IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.9E-201091IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144588.63E-4295198IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440749.42E-4297239No hitNo description
SMARTSM011382.6E-6597246IPR014889Transcription factor DP, C-terminal
PfamPF087812.2E-4298225IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
RASGPDKTGR GLRQFSLKVC EKVESKVRTT YNEVADELVA EFALPNNDGT PPDQQQYDEK  60
NIRRRVYDAL NVLMAMDIIS KDKKEIQWRG LPRTSLSDIE ELKAERLSLR KRIEKKTAYS  120
QELEEQYVGL QNLIRRNEHL YSSGNAPTGG VALPFILVQT RPHATVEVEI SEDMQLVHFD  180
FNSTPFELHD DNFVLKTMTF CDQPPPLNNG QSNSHQRASH SPVPENNNEG PSTYPTPHMH  240
QSHPQPPQHQ LPVTNNASAP VKSPEIIKSS VKPEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-36195193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937330.0AB493733.1 Arabidopsis thaliana At5g03415 mRNA for hypothetical protein, partial cds, clone: RAAt5g03415.
GenBankAJ2945320.0AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene).
GenBankAK2281480.0AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08.
GenBankAY0860180.0AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013654681.11e-174PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_013654682.11e-174PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_013721471.11e-174PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-160DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D3AHL91e-172A0A0D3AHL9_BRAOL; Uncharacterized protein
STRINGfgenesh2_kg.6__250__AT5G03415.11e-158(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-156Transcription factor DP